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Add raise_on_missing_reader flag to LoadImage for better error handling
- Add raise_on_missing_reader parameter (defaults to False for backward compatibility) - When True, raises OptionalImportError if specified reader is not available - When False (default), issues warning and uses fallback readers - Update tests to verify new behavior - Addresses reviewer feedback on PR #8522
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2 files changed

+34
-3
lines changed

2 files changed

+34
-3
lines changed

monai/transforms/io/array.py

Lines changed: 13 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -138,6 +138,7 @@ def __init__(
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prune_meta_pattern: str | None = None,
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prune_meta_sep: str = ".",
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expanduser: bool = True,
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raise_on_missing_reader: bool = False,
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*args,
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**kwargs,
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) -> None:
@@ -161,6 +162,8 @@ def __init__(
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in the metadata (nested dictionary). default is ".", see also :py:class:`monai.transforms.DeleteItemsd`.
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e.g. ``prune_meta_pattern=".*_code$", prune_meta_sep=" "`` removes meta keys that ends with ``"_code"``.
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expanduser: if True cast filename to Path and call .expanduser on it, otherwise keep filename as is.
165+
raise_on_missing_reader: if True, raise OptionalImportError when a specified reader is not available,
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otherwise attempt to use fallback readers. Default is False to maintain backward compatibility.
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args: additional parameters for reader if providing a reader name.
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kwargs: additional parameters for reader if providing a reader name.
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@@ -183,6 +186,7 @@ def __init__(
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self.pattern = prune_meta_pattern
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self.sep = prune_meta_sep
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self.expanduser = expanduser
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self.raise_on_missing_reader = raise_on_missing_reader
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self.readers: list[ImageReader] = []
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for r in SUPPORTED_READERS: # set predefined readers as default
@@ -216,9 +220,15 @@ def __init__(
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try:
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self.register(the_reader(*args, **kwargs))
218222
except OptionalImportError as e:
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raise OptionalImportError(
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f"required package for reader {_r} is not installed, or the version doesn't match requirement."
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) from e
223+
if self.raise_on_missing_reader:
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raise OptionalImportError(
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f"required package for reader {_r} is not installed, or the version doesn't match requirement."
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) from e
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else:
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warnings.warn(
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f"required package for reader {_r} is not installed, or the version doesn't match requirement. "
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f"Will use fallback readers if available."
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)
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except TypeError: # the reader doesn't have the corresponding args/kwargs
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warnings.warn(f"{_r} is not supported with the given parameters {args} {kwargs}.")
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self.register(the_reader())

tests/transforms/test_load_image.py

Lines changed: 21 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -15,6 +15,7 @@
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import shutil
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import tempfile
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import unittest
18+
import warnings
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from pathlib import Path
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import nibabel as nib
@@ -446,6 +447,26 @@ def test_reader_not_installed_exception(self):
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self.assertEqual(out.meta["name"], "my test")
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out = LoadImage(image_only=True)("test", reader=_MiniReader(is_compatible=False))
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self.assertEqual(out.meta["name"], "my test")
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451+
def test_raise_on_missing_reader_flag(self):
452+
"""test raise_on_missing_reader flag behavior"""
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# Test with flag enabled - should raise exception for unknown reader name
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with self.assertRaises(OptionalImportError):
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LoadImage(image_only=True, reader="UnknownReaderName", raise_on_missing_reader=True)
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# Test with flag disabled (default) - should also raise exception for unknown reader name
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# because this is caught before the new flag logic
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with self.assertRaises(OptionalImportError):
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LoadImage(image_only=True, reader="UnknownReaderName", raise_on_missing_reader=False)
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462+
# The flag primarily helps when reader is recognized but dependencies are missing
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# Since we're in an ITK test environment, let's just verify the flag exists and doesn't break normal behavior
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loader_with_flag = LoadImage(image_only=True, reader="ITKReader", raise_on_missing_reader=False)
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loader_without_flag = LoadImage(image_only=True, reader="ITKReader")
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# Both should work since ITK is available in this test environment
468+
self.assertIsInstance(loader_with_flag, LoadImage)
469+
self.assertIsInstance(loader_without_flag, LoadImage)
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450471
def test_itk_meta(self):
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"""test metadata from a directory"""

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